- ElementFileStream<ElementType> - Class in org.gcn.plinguacore.simulator
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This class gives support for storing and loading different elements, according to ElementType class.
- ElementFileStream(ElementType, String) - Constructor for class org.gcn.plinguacore.simulator.ElementFileStream
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Creates a new ElementFileStream
- ElementFileStream(String) - Constructor for class org.gcn.plinguacore.simulator.ElementFileStream
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Creates a new ElementFileStream
- emptyMembranes - Static variable in class org.gcn.plinguacore.util.psystem.Psystem
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- endColumn - Variable in class org.gcn.plinguacore.parser.input.plingua.Token
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beginLine and beginColumn describe the position of the first character
of this token; endLine and endColumn describe the position of the
last character of this token.
- endLine - Variable in class org.gcn.plinguacore.parser.input.plingua.Token
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beginLine and beginColumn describe the position of the first character
of this token; endLine and endColumn describe the position of the
last character of this token.
- entrySet() - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet
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- entrySet() - Method in class org.gcn.plinguacore.util.HashMultiSet
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- entrySet() - Method in class org.gcn.plinguacore.util.InmutableMultiSet
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- entrySet() - Method in interface org.gcn.plinguacore.util.MultiSet
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Get the set of objects without repetitions Changes in this set will
affect the multiset
- EnvironmentLeftHandRule - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba
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- EnvironmentLeftHandRule() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentLeftHandRule
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- EnvironmentLeftHandRule(String, String) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentLeftHandRule
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- EnvironmentLeftHandRule(IRule) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentLeftHandRule
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- EnvironmentRightHandRule - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba
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- EnvironmentRightHandRule() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRightHandRule
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- EnvironmentRulesBlock - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba
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- EnvironmentRulesBlock() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRulesBlock
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- EnvironmentRulesBlock(EnvironmentLeftHandRule) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRulesBlock
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- equals(Object) - Method in class org.gcn.plinguacore.parser.input.messages.InputParserDecoratorMsg
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- equals(Object) - Method in class org.gcn.plinguacore.parser.input.messages.MsgInterval
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentLeftHandRule
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRulesBlock
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.MatrixKey
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.MatrixRow
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRulesBlock
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.HashKey
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- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.ParteIzquierda
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Deprecated.
- equals(Object) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.ProbabilisticLeftHandRule
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- equals(Object) - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet
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- equals(Object) - Method in class org.gcn.plinguacore.util.HashMultiSet
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- equals(Object) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node
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- equals(Object) - Method in class org.gcn.plinguacore.util.InmutableMultiSet
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- equals(Object) - Method in class org.gcn.plinguacore.util.Pair
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.ActivationSets
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.AlphabetObject
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.Label
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.membrane.Membrane
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.rule.HandRule
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.rule.OuterRuleMembrane
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.rule.RightHandRule
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- equals(Object) - Method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- equals(Object) - Method in class org.gcn.plinguacore.util.Triple
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- equals(Object) - Method in class org.gcn.plinguacore.util.UnionSet
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- ERROR - Static variable in class org.gcn.plinguacore.parser.input.VerbosityConstants
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The verbosity level for simulators which are expected to report only error messages
- evalFunction(String, List<Object>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure
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- evalFunction(EvaluableFunction, List<Object>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure
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- EvaluableFunction - Interface in org.gcn.plinguacore.util.psystem.spiking.membrane
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- evaluateFunction(List<Object>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.AstrocyteFunction
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- evaluateFunction(List<Object>) - Method in interface org.gcn.plinguacore.util.psystem.spiking.membrane.EvaluableFunction
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- EvolutionCommunicationPsystemFactory - Class in org.gcn.plinguacore.simulator.cellLike.transition
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- EvSymportAntiportPsystemFactory - Class in org.gcn.plinguacore.simulator.cellLike.transition
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This class is intended to give support for P-systems in which only membrane
communication and evolution are allowed
- execute(CellLikeSkinMembrane, Map<String, Integer>, String, String, long) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRightHandRule
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- execute(CellLikeSkinMembrane, Map<String, Integer>, String, String, long) - Method in interface org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.IRightHandRule
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- execute(CellLikeSkinMembrane, Map<String, Integer>, String, String, long) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule
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- execute(ChangeableMembrane, MultiSet<String>) - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule
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Executes the rule on a membrane and an outer multiset and returns if the
execution could be committed
- execute(ChangeableMembrane, MultiSet<String>, long) - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule
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Executes the rule on a membrane and an outer multiset a number of times
indicated by executions and returns if the execution could be committed
- execute(ChangeableMembrane, MultiSet<String>) - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule
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- execute(ChangeableMembrane, MultiSet<String>, long) - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule
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- executeRules(CellLikeConfiguration, String, DCBAProbabilisticSimulator) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DynamicMatrix
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- executeSafeBuddingDivisionPhaseOne(ChangeableMembrane, Configuration, ArrayList<SpikingMembrane>, ArrayList<Pair<SpikingMembrane, SpikingMembrane>>) - Method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- executeSafeBuddingDivisionPhaseTwo(ChangeableMembrane, ChangeableMembrane, Configuration, boolean) - Static method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- executeSafeInputSpiking(ChangeableMembrane, long) - Static method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- executeSafeSpiking(ChangeableMembrane, Configuration) - Method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- existsArc(Pair<Integer, Integer>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure
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- expectedTokenSequences - Variable in exception org.gcn.plinguacore.parser.input.plingua.ParseException
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Each entry in this array is an array of integers.
- ExtendedLinkedHashSet<E> - Class in org.gcn.plinguacore.util
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- ExtendedLinkedHashSet() - Constructor for class org.gcn.plinguacore.util.ExtendedLinkedHashSet
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- ExtendedLinkedHashSet(Collection<? extends E>) - Constructor for class org.gcn.plinguacore.util.ExtendedLinkedHashSet
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