A B C D E F G H I K L M N O P R S T U V W X

N

negSymbol - Static variable in class org.gcn.plinguacore.util.psystem.spiking.SpikingConstants

newToken(int) - Static method in class org.gcn.plinguacore.parser.input.plingua.Token

Returns a new Token object, by default.

next - Variable in class org.gcn.plinguacore.parser.input.plingua.Token

A reference to the next regular (non-special) token from the input stream.

next() - Method in class org.gcn.plinguacore.util.ShuffleIterator

next() - Method in class org.gcn.plinguacore.util.UnionIterator

nextInt(int) - Method in class org.gcn.plinguacore.util.RandomNumbersGenerator

nextIntBi(int, double) - Method in class org.gcn.plinguacore.util.RandomNumbersGenerator

nextLong(long) - Method in class org.gcn.plinguacore.util.RandomNumbersGenerator

nextLongBi(long, double) - Method in class org.gcn.plinguacore.util.RandomNumbersGenerator

NO_MESSAGES - Static variable in class org.gcn.plinguacore.parser.input.VerbosityConstants

The verbosity level for simulators which are expected to report no messages

NoCharges - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

NoCharges() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCharges

NoCharges(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCharges

NoConstant - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doens't hold a ratio or kinetic constant.

NoConstant(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoConstant

Creates a new NoConstant instance, which wraps cr as stated by Decorator pattern.

NoConstant() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoConstant

Creates a new NoConstant instance, which checks only the restrictions defined on itself.

NoCooperation - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if there's one or no object in the left hand of the rule, no matter if, in case it exists, it's into an inner membrane, the outer multiset or the inner multiset of the outer membrane

NoCooperation() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCooperation

Creates a new NoCooperation instance, which checks only the restrictions defined on itself.

NoCooperation(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCooperation

Creates a new NoCooperation instance, which wraps cr as stated by Decorator pattern.

NoCooperationWithDivision - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't cause any object to evolve

NoCooperationWithDivision() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCooperationWithDivision

Creates a new NoEvolution instance, which checks only the restrictions defined on itself.

NoCooperationWithDivision(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCooperationWithDivision

Creates a new NoEvolution instance, which wraps cr as stated by Decorator pattern.

NoCreation - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't cause membrane creation

NoCreation() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCreation

Creates a new NoCreation instance, which checks only the restrictions defined on itself.

NoCreation(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoCreation

Creates a new NoCreation instance, which wraps cr as stated by Decorator pattern.

NoDifferentMainLabels - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

NoDifferentMainLabels() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDifferentMainLabels

NoDifferentMainLabels(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDifferentMainLabels

NoDissolution - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't dissolve the outer membrane

NoDissolution() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDissolution

Creates a new NoDissolution instance, which checks only the restrictions defined on itself.

NoDissolution(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDissolution

Creates a new NoDissolution instance, which wraps cr as stated by Decorator pattern.

NoDivision - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't divide the membrane

NoDivision() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDivision

Creates a new NoDivision instance, which checks only the restrictions defined on itself.

NoDivision(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoDivision

Creates a new NoDivision instance, which wraps cr as stated by Decorator pattern.

NoEmptyLeftMultiSet - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the're is any object in the left hand of the rule, no matter if it's in any inner membrane, in the outer membrane or in the outer multiset

NoEmptyLeftMultiSet() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoEmptyLeftMultiSet

Creates a new NoEmptyLeftMultiSet instance, which checks only the restrictions defined on itself.

NoEmptyLeftMultiSet(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoEmptyLeftMultiSet

Creates a new NoEmptyLeftMultiSet instance, which wraps cr as stated by Decorator pattern.

NoEvolution - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't cause any object to evolve

NoEvolution() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoEvolution

Creates a new NoEvolution instance, which checks only the restrictions defined on itself.

NoEvolution(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoEvolution

Creates a new NoEvolution instance, which wraps cr as stated by Decorator pattern.

NoGeneStrings - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doens't hold any gene string.

NoGeneStrings() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoGeneStrings

Creates a new NoGeneStrings instance, which checks only the restrictions defined on itself.

NoGeneStrings(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoGeneStrings

Creates a new NoGeneStrings instance, which wraps cr as stated by Decorator pattern.

NoLeftExternalMultiSet - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer multiset in the left hand of the rule is empty (it has no objects)

NoLeftExternalMultiSet() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSet

Creates a new NoLeftExternalMultiSet instance, which checks only the restrictions defined on itself.

NoLeftExternalMultiSet(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSet

Creates a new NoLeftExternalMultiSet instance, which wraps cr as stated by Decorator pattern.

NoLeftExternalMultiSetWithCreation - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests whether the outer multiset in the left hand of the rule is empty (it has no objects) or it doesn't create new membranes

NoLeftExternalMultiSetWithCreation() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithCreation

Creates a new NoLeftExternalMultiSetWithCreation instance, which checks only the restrictions defined on itself.

NoLeftExternalMultiSetWithCreation(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithCreation

Creates a new NoLeftExternalMultiSetWithCreation instance, which wraps cr as stated by Decorator pattern.

NoLeftExternalMultiSetWithDissolution - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests whether the outer multiset in the left hand of the rule is empty (it has no objects) or it doesn't dissolve the outer membrane

NoLeftExternalMultiSetWithDissolution() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithDissolution

Creates a new NoLeftExternalMultiSetWithDissolution instance, which checks only the restrictions defined on itself.

NoLeftExternalMultiSetWithDissolution(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithDissolution

Creates a new NoLeftExternalMultiSetWithDissolution instance, which wraps cr as stated by Decorator pattern.

NoLeftExternalMultiSetWithDivision - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests whether the outer multiset in the left hand of the rule is empty (it has no objects) or it doesn't divide the outer membrane

NoLeftExternalMultiSetWithDivision() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithDivision

Creates a new NoLeftExternalMultiSetWithDivision instance, which checks only the restrictions defined on itself.

NoLeftExternalMultiSetWithDivision(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftExternalMultiSetWithDivision

Creates a new NoLeftExternalMultiSetWithDivision instance, which wraps cr as stated by Decorator pattern.

NoLeftInnerMembranes - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer membrane in the left hand of the rule has no inner membranes

NoLeftInnerMembranes() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftInnerMembranes

Creates a new NoLeftInnerMembranes instance, which checks only the restrictions defined on itself.

NoLeftInnerMembranes(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftInnerMembranes

Creates a new NoLeftInnerMembranes instance, which wraps cr as stated by Decorator pattern.

NoLeftRepeatedLabels - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer membrane in the left hand of the rule has no repeated labels, testing both the outer membrane and the inner membranes (if they exist)

NoLeftRepeatedLabels() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftRepeatedLabels

Creates a new NoLeftRepeatedLabels instance, which checks only the restrictions defined on itself.

NoLeftRepeatedLabels(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoLeftRepeatedLabels

Creates a new NoLeftRepeatedLabels instance, which wraps cr as stated by Decorator pattern.

NoMaximalSim - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic

NoMaximalSim(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.NoMaximalSim

NoMultipleProduction - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if there's only one object in the right hand of the rule.

NoMultipleProduction() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoMultipleProduction

Creates a new NoMultipleProduction instance, which checks only the restrictions defined on itself.

NoMultipleProduction(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoMultipleProduction

Creates a new NoMultipleProduction instance, which wraps cr as stated by Decorator pattern.

NoMultipleProductionWithDivision - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't cause any object to evolve

NoMultipleProductionWithDivision() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoMultipleProductionWithDivision

Creates a new NoEvolution instance, which checks only the restrictions defined on itself.

NoMultipleProductionWithDivision(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoMultipleProductionWithDivision

Creates a new NoEvolution instance, which wraps cr as stated by Decorator pattern.

NonDeterministicTransitionSimulator - Class in org.gcn.plinguacore.simulator.cellLike.transition

NonDeterministicTransitionSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.transition.NonDeterministicTransitionSimulator

NonDeterministicTransitionSimulator2 - Class in org.gcn.plinguacore.simulator.cellLike.transition

NonDeterministicTransitionSimulator2(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.transition.NonDeterministicTransitionSimulator2

NoPriority - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the rule doesn't hold an integer constant representing its execution priority

NoPriority() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoPriority

Creates a new NoPriority instance, which checks only the restrictions defined on itself.

NoPriority(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoPriority

Creates a new NoPriority instance, which wraps cr as stated by Decorator pattern.

NoRepeatedLabels - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if rule has no repeated labels, testing both the outer membrane and the inner membranes (if they exist) in each hand separately

NoRepeatedLabels() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRepeatedLabels

Creates a new NoRepeatedLabels instance, which checks only the restrictions defined on itself.

NoRepeatedLabels(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRepeatedLabels

Creates a new NoRepeatedLabels instance, which wraps cr as stated by Decorator pattern.

NoRightExternalMultiSet - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer multiset in the right hand of the rule is empty (it has no objects)

NoRightExternalMultiSet() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightExternalMultiSet

Creates a new NoRightExternalMultiSet instance, which checks only the restrictions defined on itself.

NoRightExternalMultiSet(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightExternalMultiSet

Creates a new NoRightExternalMultiSet instance, which wraps cr as stated by Decorator pattern.

NoRightInnerMembranes - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer membrane in the right hand of the rule has no inner membranes

NoRightInnerMembranes() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightInnerMembranes

Creates a new NoRightInnerMembranes instance, which checks only the restrictions defined on itself.

NoRightInnerMembranes(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightInnerMembranes

Creates a new NoRightInnerMembranes instance, which wraps cr as stated by Decorator pattern.

NoRightRepeatedLabels - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer membrane in the right hand of the rule has no repeated labels, testing both the outer membrane and the inner membranes (if they exist)

NoRightRepeatedLabels() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightRepeatedLabels

Creates a new NoRightRepeatedLabels instance, which checks only the restrictions defined on itself.

NoRightRepeatedLabels(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NoRightRepeatedLabels

Creates a new NoRightRepeatedLabels instance, which wraps cr as stated by Decorator pattern.

normalizeRowsAndCalculateMinimums(CellLikeConfiguration, String) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DynamicMatrix

NotAllEmptyMultiSet - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if there's any object in the rule, whether in the left hand or in the right hand

NotAllEmptyMultiSet() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NotAllEmptyMultiSet

Creates a new NotAllEmptyMultiSet instance, which checks only the restrictions defined on itself.

NotAllEmptyMultiSet(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.NotAllEmptyMultiSet

Creates a new NotAllEmptyMultiSet instance, which wraps cr as stated by Decorator pattern.

numParams - Variable in class org.gcn.plinguacore.util.psystem.spiking.membrane.AstrocyteFunction

numParams - Static variable in interface org.gcn.plinguacore.util.psystem.spiking.membrane.EvaluableFunction

A B C D E F G H I K L M N O P R S T U V W X