- DCBAProbabilisticSimulator - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba
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- DCBAProbabilisticSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DCBAProbabilisticSimulator
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- DEBUG - Static variable in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DCBAProbabilisticSimulator
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- DecoratorCheck<T> - Class in org.gcn.plinguacore.util.check
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- DecoratorCheck() - Constructor for class org.gcn.plinguacore.util.check.DecoratorCheck
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Creates a new DecoratorCheckRule instance, which checks only the restrictions defined on itself.
- DecoratorCheck(Check<T>) - Constructor for class org.gcn.plinguacore.util.check.DecoratorCheck
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Creates a new DecoratorCheckRule instance, which wraps cr as stated
by Decorator pattern.
- DecoratorCheckPsystem - Class in org.gcn.plinguacore.util.psystem.checkPsystem
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- DecoratorCheckPsystem() - Constructor for class org.gcn.plinguacore.util.psystem.checkPsystem.DecoratorCheckPsystem
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- DecoratorCheckPsystem(CheckPsystem) - Constructor for class org.gcn.plinguacore.util.psystem.checkPsystem.DecoratorCheckPsystem
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- DecoratorCheckRule - Class in org.gcn.plinguacore.util.psystem.rule.checkRule
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This class provides the basic functionality for all CheckRule instances which
wrap another instance, as specified by Decorator pattern
- DecoratorCheckRule() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule
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Creates a new DecoratorCheckRule instance, which checks only the restrictions defined on itself.
- DecoratorCheckRule(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule
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Creates a new DecoratorCheckRule instance, which wraps cr as stated
by Decorator pattern.
- DecoratorSimulator - Class in org.gcn.plinguacore.simulator
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This class gives support for all common functionality in simulator
decorators, according to Decorator pattern
- DecoratorSimulator(ISimulator) - Constructor for class org.gcn.plinguacore.simulator.DecoratorSimulator
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Creates a new instance based on a decorated instance
- decreaseStepsToOpen() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane
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- DETAILED_INFO - Static variable in class org.gcn.plinguacore.parser.input.VerbosityConstants
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The verbosity level for simulators which are expected to report error, warning and basic and detailed info messages no messages
- disconnect(SpikingMembrane, SpikingMembrane) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeMembrane
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeNoSkinMembrane
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.membrane.ChangeableMembrane
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Dissolves the membrane
- dissolve() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingEnvironment
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeEnvironment
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- dissolve() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembrane
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- dissolves() - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule
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Gets if the rule dissolves the membrane which is applied to
- dissolves() - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule
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- dissolves() - Method in class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRule
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- divide() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeMembrane
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- divide() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeNoSkinMembrane
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- divide() - Method in class org.gcn.plinguacore.util.psystem.membrane.ChangeableMembrane
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Divides the membrane and returns the newly obtained membrane
- divide() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingEnvironment
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- divide() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane
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- divide() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeEnvironment
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- divide() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembrane
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- DivisionPsystemFactory - Class in org.gcn.plinguacore.simulator.cellLike.activeMembranes
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This class is intended to give support for P-systems in which only membrane
division, evolution, dissolution and communication are allowed
- Dnd2SimParallel - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- Dnd2SimParallel(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd2SimParallel
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- Dnd2SimSeq - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- Dnd2SimSeq(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd2SimSeq
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- Dnd2StrategyRules1 - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- Dnd2StrategyRules1(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd2StrategyRules1
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- Dnd3ProbabilisticSimulator - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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Deprecated.
- Dnd3ProbabilisticSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd3ProbabilisticSimulator
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Deprecated.
- Dnd4ProbabilisticSimulator - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- Dnd4ProbabilisticSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd4ProbabilisticSimulator
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- DndpMatrix - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- DndpMatrix(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.DndpMatrix
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- DndProbabilisticSelExecThread - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- DndProbabilisticSelExecThread(AbstractDndProbabilisticSimulator) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.DndProbabilisticSelExecThread
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- DndProbabilisticSimulatorParallel - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- DndProbabilisticSimulatorParallel(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.DndProbabilisticSimulatorParallel
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- DndProbabilisticSimulatorSequential - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic
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- DndProbabilisticSimulatorSequential(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.DndProbabilisticSimulatorSequential
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- doBuddy() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane
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- Done() - Method in class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream
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- DoubleCommunicationTissueLikeRule - Class in org.gcn.plinguacore.util.psystem.rule.tissueLike
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- DynamicMatrix - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba
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- DynamicMatrix(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DynamicMatrix
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