A B C D E F G H I K L M N O P R S T U V W X

S

saveElement() - Method in class org.gcn.plinguacore.simulator.ElementFileStream

Saves the element

selectRule(Object, ChangeableMembrane, long) - Method in class org.gcn.plinguacore.simulator.AbstractSelectionExecutionSimulator

selectSequentialMembranes(ArrayList<Pair<ChangeableMembrane, MultiSet<Object>>>, long, long) - Method in class org.gcn.plinguacore.simulator.spiking.SpikingSimulator

set(IRule) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentLeftHandRule

set(IRule) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRightHandRule

set(IRule) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

set(IRule) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule

set(IRule) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

setAbstractPsystemFactory(IPsystemFactory) - Method in class org.gcn.plinguacore.util.psystem.Psystem

Sets an specific instance of PsystemFactotyInterface as the current factory to be used

setAllObjectsWithInfiniteMultiplicity() - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

setAllObjectsWithInfiniteMultiplicity() - Method in interface org.gcn.plinguacore.util.InfiniteMultiSet

setAllZeroes(boolean) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DynamicMatrix

setAstrocyteCtrlList(List<String>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setAstrocyteList(List<String>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setAstType(String) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setAsynch(int) - Method in class org.gcn.plinguacore.simulator.spiking.SpikingSimulator

setAsynchMode(int) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setAsynchValidConfiguration(Map<String, Long>) - Method in class org.gcn.plinguacore.simulator.spiking.SpikingSimulator

setCharge(byte) - Method in class org.gcn.plinguacore.util.psystem.membrane.ChangeableMembrane

Sets the membrane charge

setCheckCompleteProbabilities(boolean) - Static method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.ProbabilisticPsystemFactory

setCheckConsistentRules(boolean) - Static method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.ProbabilisticPsystemFactory

setCheckRule(CheckRule) - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

Set the CheckRule object for this RulesSet

setColumn(MatrixColumn) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.MatrixKey

setCurrentConfig(Configuration) - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

setCurrentConfig(Configuration) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDnd2Sim

setCurrentConfig(Configuration) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDndProbabilisticSimulator

setCurrentConfig(Configuration) - Method in class org.gcn.plinguacore.simulator.CopyOfAbstractSimulator

Sets the current configuration of the simulator

setCurrentConfig(Configuration) - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

setCurrentConfig(Configuration) - Method in interface org.gcn.plinguacore.simulator.ISimulator

Sets the current configuration of the simulator

setElement(ElementType) - Method in class org.gcn.plinguacore.simulator.ElementFileStream

Sets the element to be saved

setErrorChannel(PrintStream) - Method in class org.gcn.plinguacore.parser.input.InputParser

Sets the PrintStream instance to write errors

setFile(String) - Method in class org.gcn.plinguacore.simulator.ElementFileStream

Sets the file where the current element will be saved on

setFirst(E) - Method in class org.gcn.plinguacore.util.Pair

setFirstMultiSet(MultiSet<String>) - Method in class org.gcn.plinguacore.util.psystem.Psystem

setI(int) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

setInfoChannel(PrintStream) - Method in class org.gcn.plinguacore.parser.input.InputParser

Sets the PrintStream to write information

setInfoChannel(PrintStream) - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

setInfoChannel(PrintStream) - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

setInfoChannel(PrintStream) - Method in interface org.gcn.plinguacore.simulator.ISimulator

Sets the simulator info channel

setInhibited(boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setInhibitory(boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setInputMembrane(String, boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setInputMembrane(SpikingMembrane, boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setInputMembrane(SpikingMembrane, HashMap<Long, Long>, boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setInputSequence(HashMap<Long, Long>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingEnvironment

setK(int) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDnd2Sim

setLabel(String) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.Astrocyte

setLeftChild(IndexedPriorityQueue<E>.Node<T>) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

setLFunctionNames(List<String>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.Astrocyte

setLThresholds(SortedSet<Long>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.Astrocyte

setMainMembraneCharge(byte) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

setMainMembraneLabel(String) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule

setMainMultiSet(MultiSet<String>) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

setMaxIterations(int) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDndProbabilisticSimulator

setMaxIterations(int) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.Dnd4ProbabilisticSimulator

setMaxIterations(int) - Method in interface org.gcn.plinguacore.simulator.cellLike.probabilistic.ISelectionLoopAlgorithm

setMembraneClosedToBuddingOrDivision(SpikingRule) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane

setMembraneClosedToBuddingOrDivision() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane

setMembraneClosedToSpike(long, SpikingRule) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane

setMembraneOpen() - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane

setMembraneStructure(MembraneStructure) - Method in class org.gcn.plinguacore.util.psystem.cellLike.CellLikePsystem

setMembraneStructure(MembraneStructure) - Method in class org.gcn.plinguacore.util.psystem.Psystem

setMembraneStructure(MembraneStructure) - Method in class org.gcn.plinguacore.util.psystem.spiking.SpikingPsystem

setMembraneStructure(MembraneStructure) - Method in class org.gcn.plinguacore.util.psystem.tissueLike.TissueLikePsystem

setMin(long) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.MatrixColumn

setMsgChannel(PrintStream) - Method in class org.gcn.plinguacore.parser.input.InputParser

Sets the PrintStream instance to write messages

setNumber(int) - Method in class org.gcn.plinguacore.util.psystem.Configuration

setOutputMembrane(String, boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setOutputMembranes(List<SpikingMembrane>, boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setParent(IndexedPriorityQueue<E>.Node<T>) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

setParentMultiSet(MultiSet<String>) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

setPotential(Long) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.Astrocyte

setProbability(float) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRightHandRule

setProbability(String, float) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

setPsystem(Psystem) - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

setPsystem(Psystem) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDnd2Sim

setPsystem(Psystem) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDndProbabilisticSimulator

setPsystem(Psystem) - Method in class org.gcn.plinguacore.simulator.CopyOfAbstractSimulator

setPsystem(Psystem) - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

setPsystem(Psystem) - Method in interface org.gcn.plinguacore.simulator.ISimulator

Sets the simulator P-system

setrCharge(byte) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRulesBlock

setRightChild(IndexedPriorityQueue<E>.Node<T>) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

setRow(MatrixRow) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.MatrixKey

setRuleId(String, Long) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.EnvironmentRightHandRule

setRuleId(String, Long) - Method in interface org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.IRightHandRule

setRuleId(String, Long) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

setRuleId(long) - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule

setRuleId(long) - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule

setRules(RulesSet) - Method in class org.gcn.plinguacore.util.psystem.Psystem

setSecond(T) - Method in class org.gcn.plinguacore.util.Pair

setSecondMultiSet(MultiSet<String>) - Method in class org.gcn.plinguacore.util.psystem.Psystem

setSelectedRule(SpikingRule) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembrane

setSequential(int) - Method in class org.gcn.plinguacore.simulator.spiking.SpikingSimulator

setSequentialMode(int) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setShowBinarySequence(boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setShowNaturalSequence(ArrayList<Object>) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setShowRules(boolean) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DCBAProbabilisticSimulator

setShowSummatories(boolean) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

setSourceId(Integer) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setSpikesInput(Long) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setSpikesOutput(Long) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setStepsTaken(long) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingEnvironment

setTargetId(Integer) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setThird(L) - Method in class org.gcn.plinguacore.util.Triple

setTimed(boolean) - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

setTimed(boolean) - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

setTimed(boolean) - Method in interface org.gcn.plinguacore.simulator.ISimulator

Sets if the elapsed time is being measured or not

setValue(T) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

setVerbosity(int) - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

setVerbosity(int) - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

setVerbosity(int) - Method in interface org.gcn.plinguacore.simulator.ISimulator

Sets the verbosity level which the instances take into account when reporting messages.

setVerbosityLevel(int) - Method in class org.gcn.plinguacore.parser.input.InputParser

Sets the verbosity level (usually between 0-5)

setWarningChannel(PrintStream) - Method in class org.gcn.plinguacore.parser.input.InputParser

Sets the PrintStream instance to write warnings

setWeight(Long) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.ArcInfo

setWriteToFile(boolean) - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.DCBAProbabilisticSimulator

ShuffleIterator<E> - Class in org.gcn.plinguacore.util

ShuffleIterator(List<E>) - Constructor for class org.gcn.plinguacore.util.ShuffleIterator

SimpleCharStream - Class in org.gcn.plinguacore.parser.input.plingua

An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).

SimpleCharStream(Reader, int, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(Reader, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(Reader) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream, String, int, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream, int, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream, String, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream, int, int) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream, String) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

SimpleCharStream(InputStream) - Constructor for class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

size() - Method in class org.gcn.plinguacore.util.ExtendedLinkedHashSet

size() - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

size() - Method in class org.gcn.plinguacore.util.HashMultiSet

size() - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue

size() - Method in class org.gcn.plinguacore.util.InmutableMultiSet

size() - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

size() - Method in class org.gcn.plinguacore.util.UnionSet

SkeletonHandRule - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

SkeletonHandRule() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

SkeletonHandRule(byte, MultiSet<String>, MultiSet<String>) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonHandRule

SkeletonLeftHandRule - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

SkeletonLeftHandRule() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule

SkeletonLeftHandRule(IRule) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule

SkeletonLeftHandRule(String, byte, MultiSet<String>, MultiSet<String>) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonLeftHandRule

SkeletonRightHandRule - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

SkeletonRightHandRule() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

SkeletonRightHandRule(IRule) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

SkeletonRightHandRule(byte, MultiSet<String>, MultiSet<String>) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRightHandRule

SkeletonRulesBlock - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

SkeletonRulesBlock() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRulesBlock

SkeletonRulesBlock(IRule) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRulesBlock

SkeletonRulesBlock(SkeletonLeftHandRule, byte) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.SkeletonRulesBlock

skip(long) - Method in class org.gcn.plinguacore.parser.input.byteCounter.InputStreamWrapper

sortByPriority(List<IRule>) - Static method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

specialToken - Variable in class org.gcn.plinguacore.parser.input.plingua.Token

This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.

specificParse(InputStream, String[]) - Method in class org.gcn.plinguacore.parser.input.plingua.PlinguaInputParser

specificParse(StringReader, String[]) - Method in class org.gcn.plinguacore.parser.input.plingua.PlinguaInputParser

spikeSymbol - Static variable in class org.gcn.plinguacore.util.psystem.spiking.SpikingConstants

SpikingConfiguration - Class in org.gcn.plinguacore.util.psystem.spiking

SpikingConstants - Class in org.gcn.plinguacore.util.psystem.spiking

SpikingCreateSimultator - Class in org.gcn.plinguacore.simulator.spiking

SpikingCreateSimultator(String) - Constructor for class org.gcn.plinguacore.simulator.spiking.SpikingCreateSimultator

SpikingEnvironment - Class in org.gcn.plinguacore.util.psystem.spiking.membrane

SpikingEnvironment(String, SpikingMembraneStructure) - Constructor for class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingEnvironment

SpikingMembrane - Class in org.gcn.plinguacore.util.psystem.spiking.membrane

SpikingMembraneStructure - Class in org.gcn.plinguacore.util.psystem.spiking.membrane

SpikingMembraneStructure(String) - Constructor for class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

SpikingMembraneStructure(MembraneStructure) - Constructor for class org.gcn.plinguacore.util.psystem.spiking.membrane.SpikingMembraneStructure

SpikingPsystem - Class in org.gcn.plinguacore.util.psystem.spiking

This class represents P-systems belonging to spike-like group

SpikingPsystem() - Constructor for class org.gcn.plinguacore.util.psystem.spiking.SpikingPsystem

SpikingPsystemFactory - Class in org.gcn.plinguacore.simulator.spiking

SpikingRule - Class in org.gcn.plinguacore.util.psystem.rule.spiking

SpikingRuleFactory - Class in org.gcn.plinguacore.util.psystem.rule.spiking

SpikingRuleFactory() - Constructor for class org.gcn.plinguacore.util.psystem.rule.spiking.SpikingRuleFactory

SpikingSimulator - Class in org.gcn.plinguacore.simulator.spiking

SpikingSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.spiking.SpikingSimulator

staticFlag - Static variable in class org.gcn.plinguacore.parser.input.plingua.SimpleCharStream

StaticMatrix - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

StaticMatrix(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.StaticMatrix

StaticMethods - Class in org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba

StaticMethods() - Constructor for class org.gcn.plinguacore.simulator.cellLike.probabilistic.dcba.StaticMethods

step() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

step() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDnd2Sim

step() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDndProbabilisticSimulator

step() - Method in class org.gcn.plinguacore.simulator.CopyOfAbstractSimulator

Makes one step of simulation and generate a new configuration

step() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

step() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Takes one step of simulation and generate a new configuration

step() - Method in class org.gcn.plinguacore.simulator.StepBackSupportedSimulator

stepBack() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

stepBack() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

stepBack() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Takes one step back

stepBack() - Method in class org.gcn.plinguacore.simulator.StepBackSupportedSimulator

StepBackSupportedSimulator - Class in org.gcn.plinguacore.simulator

This class is intended to be extended by classes which provide functionality to take steps back, according to Decorator pattern

StepBackSupportedSimulator(ISimulator) - Constructor for class org.gcn.plinguacore.simulator.StepBackSupportedSimulator

Creates a new StepBackSupportedSimulator instance which will wrap sim

stepsBackAvailable() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

stepsBackAvailable() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

stepsBackAvailable() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Returns a boolean representing if there are any step back which the simulator can go back to

stepsBackAvailable() - Method in class org.gcn.plinguacore.simulator.StepBackSupportedSimulator

stopThread() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

stopThread() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

stopThread() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Stops the current thread where the run process takes place

stopThreads() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDnd2Sim

stopThreads() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractDndProbabilisticSimulator

storeFunction(Object, Integer) - Method in class org.gcn.plinguacore.util.psystem.spiking.membrane.AstrocyteFunction

storeFunction(Object, Integer) - Method in interface org.gcn.plinguacore.util.psystem.spiking.membrane.EvaluableFunction

StringReaderWrapper - Class in org.gcn.plinguacore.parser.input.byteCounter

This class provides a wrapper for StringReader which implements IByteCounter

StringReaderWrapper(StringReader) - Constructor for class org.gcn.plinguacore.parser.input.byteCounter.StringReaderWrapper

subtraction(Collection<?>) - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

subtraction(Collection<?>, long) - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

subtraction(Collection<?>) - Method in class org.gcn.plinguacore.util.HashMultiSet

subtraction(Collection<?>, long) - Method in class org.gcn.plinguacore.util.HashMultiSet

subtraction(Collection<?>, long) - Method in class org.gcn.plinguacore.util.InmutableMultiSet

subtraction(Collection<?>) - Method in class org.gcn.plinguacore.util.InmutableMultiSet

subtraction(Collection<?>) - Method in interface org.gcn.plinguacore.util.MultiSet

Subtraction between multisets

subtraction(Collection<?>, long) - Method in interface org.gcn.plinguacore.util.MultiSet

subtracts the objects in objects a number of times equal to multiplicity

supportsAlternateSteps() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

supportsAlternateSteps() - Method in class org.gcn.plinguacore.simulator.AlternativeStepsSupportedSimulator

In AlternativeStepsSupportedSimulator instances, this method always returns true

supportsAlternateSteps() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

supportsAlternateSteps() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Reports if the simulator supports alternate steps

supportsAlternativeStep(String) - Method in class org.gcn.plinguacore.simulator.CreateSimulator

Returns a boolean representing if the simulator related to id could be created capable of performing alternative steps

supportsAlternativeStep() - Method in class org.gcn.plinguacore.simulator.CreateSimulator

Returns a boolean representing if the default simulator could be created capable of performing alternative steps

supportsAlternativeStep(String) - Method in class org.gcn.plinguacore.util.psystem.Psystem

Returns a boolean representing if the simulator related to id could be created capable of performing alternative steps

supportsStepBack() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

supportsStepBack() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

supportsStepBack() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Reports if the simulator supports step back

supportsStepBack() - Method in class org.gcn.plinguacore.simulator.StepBackSupportedSimulator

Returns true, because StepBackSupportedSimulator supports step back

swap(IndexedPriorityQueue<E>.Node<E>, IndexedPriorityQueue<E>.Node<E>) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue

Swaps the tree nodes a and b and updates the index structure properly

SymmetricCommunication - Class in org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule

This class tests if the outer multiset in the left hand of the rule is equal to the multiset into the outer membrane of the right hand of the rule, and vice versa (only if the rule is not a division, creation or dissolution rule)

SymmetricCommunication() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.SymmetricCommunication

Creates a new SimetricCommunication instance, which checks only the restrictions defined on itself.

SymmetricCommunication(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.specificCheckRule.SymmetricCommunication

Creates a new SimetricCommunication instance, which wraps cr as stated by Decorator pattern.

SymportAntiportPsystemFactory - Class in org.gcn.plinguacore.simulator.cellLike.transition

This class is intended to give support for P-systems in which only membrane communication is allowed

sync() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.ThreadBarrier

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