A B C D E F G H I J L M N O P Q R S T U V W X

I

i() - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

IByteCounter - Interface in org.gcn.plinguacore.parser.input.byteCounter

This interface provides a method to count the number of bytes from the beginning of a file

IConstantRule - Interface in org.gcn.plinguacore.util.psystem.rule

ID - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

idClassName(String, String) - Method in interface org.gcn.plinguacore.simulator.ISimulatorClassProvider

Returns the name of the class which implements the simulator required by id and which provides the extra functionality appointed by typeId

IDoubleCommunicationRule - Interface in org.gcn.plinguacore.util.psystem.rule

IModelsClassProvider - Interface in org.gcn.plinguacore.util.psystem.factory

An interface to provide AbstractPsystemFactory the names of the classes which represent abstract factories for models.

IModelsInfo - Interface in org.gcn.plinguacore.util.psystem.factory

An interface to get general information about available models

INC - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

IndexedPriorityQueue<E extends java.lang.Comparable<E>> - Class in org.gcn.plinguacore.util

An indexed priority queue consists of: A tree structure of ordered pairs of the form (i,t_i).

IndexedPriorityQueue(Collection<? extends E>) - Constructor for class org.gcn.plinguacore.util.IndexedPriorityQueue

Constructor.

IndexedPriorityQueue.Node<T extends E> - Class in org.gcn.plinguacore.util

IndexedPriorityQueue.Node(int, T) - Constructor for class org.gcn.plinguacore.util.IndexedPriorityQueue.Node

InfiniteMultiSet<E> - Interface in org.gcn.plinguacore.util

initCauses() - Method in class org.gcn.plinguacore.util.check.BaseCheck

initCauses() - Method in class org.gcn.plinguacore.util.check.DecoratorCheck

Initializes the simulator message causes

initCauses() - Method in class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule

Initializes the simulator message causes

initializedCauses() - Method in class org.gcn.plinguacore.util.check.BaseCheck

initializedCauses() - Method in class org.gcn.plinguacore.util.check.DecoratorCheck

initializedCauses() - Method in class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule

Gets if the simulator message causes have been initialized

InmutableMultiSet<E> - Class in org.gcn.plinguacore.util

An inmutable multiset.

InmutableMultiSet() - Constructor for class org.gcn.plinguacore.util.InmutableMultiSet

InmutableMultiSet(MultiSet<E>) - Constructor for class org.gcn.plinguacore.util.InmutableMultiSet

InnerRuleMembrane - Class in org.gcn.plinguacore.util.psystem.rule

This class represents membranes which, in models which accept collaboration, are the children membrane of an outer membrane involved in the rule

InnerRuleMembrane(Label, byte, MultiSet<String>) - Constructor for class org.gcn.plinguacore.util.psystem.rule.InnerRuleMembrane

Creates an InnerRuleMembrane instance

InnerRuleMembrane(Label, byte) - Constructor for class org.gcn.plinguacore.util.psystem.rule.InnerRuleMembrane

Creates an InnerRuleMembrane instance

InnerRuleMembrane(Label) - Constructor for class org.gcn.plinguacore.util.psystem.rule.InnerRuleMembrane

Creates an InnerRuleMembrane instance

InputParser - Class in org.gcn.plinguacore.parser.input

This class provides the common functionality for all input parsers

InputParser() - Constructor for class org.gcn.plinguacore.parser.input.InputParser

Creates a new InputParser instance

InputParserAbstractMsg - Class in org.gcn.plinguacore.parser.input.messages

This class provides the basic functionality for all kinds of messages, such as information messages, warning messages and so on.

InputParserAbstractMsg(String) - Constructor for class org.gcn.plinguacore.parser.input.messages.InputParserAbstractMsg

Creates a new InputParserAbstractMsg instance which contains a string representing a message

InputParserDecoratorMsg - Class in org.gcn.plinguacore.parser.input.messages

This class provides the basic functionality for all InputParserDecoratorMsg instances which wrap another instance, as specified by Decorator pattern

InputParserDecoratorMsg(InputParserMsg) - Constructor for class org.gcn.plinguacore.parser.input.messages.InputParserDecoratorMsg

Creates a new InputParserDecoratorMsg instance, which wraps decorated as stated by Decorator pattern.

InputParserFactory - Class in org.gcn.plinguacore.parser.input

This class creates InputParser instances based on SimpleFactory idiom

InputParserFactory() - Constructor for class org.gcn.plinguacore.parser.input.InputParserFactory

Creates a new InputParserFactory instance

InputParserMsg - Interface in org.gcn.plinguacore.parser.input.messages

This interface defines all functionality to manage messages resulting of parsing streams which specify P-systems

InputParserMsgFactory - Class in org.gcn.plinguacore.parser.input.messages

This class provides a Factory for input parser messages

InputParserMsgFactory() - Constructor for class org.gcn.plinguacore.parser.input.messages.InputParserMsgFactory

InputStreamWrapper - Class in org.gcn.plinguacore.parser.input.byteCounter

This class provides a wrapper for InputStream which implements IByteCounter

InputStreamWrapper(InputStream) - Constructor for class org.gcn.plinguacore.parser.input.byteCounter.InputStreamWrapper

IParser - Interface in org.gcn.plinguacore.parser

This interface should be implemented by all sort of parsers (both input and output), as stated in MarkerInterface pattern

IParsersClassProvider - Interface in org.gcn.plinguacore.parser

An interface to represent the class name provider for AbstractParserFactory.

IParsersInfo - Interface in org.gcn.plinguacore.parser

An interface to represent public information about available parsers

IPriorityRule - Interface in org.gcn.plinguacore.util.psystem.rule

IPsystemFactory - Interface in org.gcn.plinguacore.util.psystem.factory

This interface is intended to be implemented by a P-system factory for each supported model.

IRule - Interface in org.gcn.plinguacore.util.psystem.rule

isEmpty() - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

isEmpty() - Method in class org.gcn.plinguacore.util.HashMultiSet

isEmpty() - Method in class org.gcn.plinguacore.util.InmutableMultiSet

isEmpty() - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

isEmpty() - Method in class org.gcn.plinguacore.util.UnionSet

isExecutable(ChangeableMembrane, MultiSet<String>) - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule

isExecutable(ChangeableMembrane, MultiSet<String>) - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule

Gets if the rule can be applied to the given membrane

isFinished() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

isFinished() - Method in class org.gcn.plinguacore.simulator.cellLike.probabilistic.AbstractProbabilisticSimulator

isFinished() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.StochasticSimulator

isFinished() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

isFinished() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Returns if the simulator has finished

isGeneString(String) - Static method in class org.gcn.plinguacore.util.GeneString

ISimulator - Interface in org.gcn.plinguacore.simulator

This interface provides all common methods for all kind of simulator IMPORTANT: Classes which implement this interface or extend both DecoratorSimulator and Simulator should have only fields which implement java.io.Serializable.

ISimulatorClassProvider - Interface in org.gcn.plinguacore.simulator

An interface to get information about class name providers for available simulators

ISimulatorInfo - Interface in org.gcn.plinguacore.simulator

An interface to get information about available simulators

isInitialConfig() - Method in class org.gcn.plinguacore.simulator.cellLike.activeMembranes.ActiveMembranesSimulator

isSkinMembrane() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeMembrane

Gets if this membrane is the skin one

isTimed() - Method in class org.gcn.plinguacore.simulator.AbstractSimulator

isTimed() - Method in class org.gcn.plinguacore.simulator.DecoratorSimulator

isTimed() - Method in interface org.gcn.plinguacore.simulator.ISimulator

Gets if the elapsed time is being measured

IStochasticRule - Interface in org.gcn.plinguacore.util.psystem.rule

iterator() - Method in class org.gcn.plinguacore.util.HashInfiniteMultiSet

iterator() - Method in class org.gcn.plinguacore.util.HashMultiSet

iterator() - Method in class org.gcn.plinguacore.util.InmutableMultiSet

iterator(String, String, int, boolean) - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

Returns an Iterator for rules with a specific label, charge and environmentID

iterator(String, String, int) - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

iterator(String, int, boolean) - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

Returns an iterator for rules with a specific label and charge.

iterator(String, int) - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

iterator() - Method in class org.gcn.plinguacore.util.psystem.rule.RulesSet

iterator(String) - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembraneStructure

iterator(String, boolean) - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembraneStructure

iterator() - Method in class org.gcn.plinguacore.util.RandomArrayList

iterator() - Method in class org.gcn.plinguacore.util.UnionSet