A B C D E F G H I J L M N O P Q R S T U V W X

U

UnionIterator<E> - Class in org.gcn.plinguacore.util

UnionIterator(Collection<? extends Collection<? extends E>>) - Constructor for class org.gcn.plinguacore.util.UnionIterator

UnionIterator(Collection<? extends E>, Collection<? extends E>) - Constructor for class org.gcn.plinguacore.util.UnionIterator

UnionSet<E> - Class in org.gcn.plinguacore.util

UnionSet(Set<E>, Set<E>) - Constructor for class org.gcn.plinguacore.util.UnionSet

update(IndexedPriorityQueue<E>.Node<E>, E) - Method in class org.gcn.plinguacore.util.IndexedPriorityQueue

Updates a given node with a new value and moves entries in the tree structure until the tree has the property that each parent is less than its children

updateA(double) - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.StochasticSimulator.Reaction

Calculates the value of a, according to the current content of the membranes in the system

updateSystem() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.DeterministicWaitingTimesSimulator

updateSystem() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.DirectStochasticSimulator

Updates the rest of the reactions, after executing nextReaction.

updateSystem() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.EfficientStochasticSimulator

Recalculates a for the reactions needed, according to the dependency graph and the last reaction executed (next reaction) Also, updates the tau (scheduled time of execution) for those reactions.

updateSystem() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.StochasticSimulator

Updates the stochastic attributes of the reactions in the system.