A B C D E F G H I J L M N O P Q R S T U V W X

D

DEBUG - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

debugStream - Variable in class org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserTokenManager

DecoratorCheck<T> - Class in org.gcn.plinguacore.util.check

DecoratorCheck() - Constructor for class org.gcn.plinguacore.util.check.DecoratorCheck

Creates a new DecoratorCheckRule instance, which checks only the restrictions defined on itself.

DecoratorCheck(Check<T>) - Constructor for class org.gcn.plinguacore.util.check.DecoratorCheck

Creates a new DecoratorCheckRule instance, which wraps cr as stated by Decorator pattern.

DecoratorCheckPsystem - Class in org.gcn.plinguacore.util.psystem.checkPsystem

DecoratorCheckPsystem() - Constructor for class org.gcn.plinguacore.util.psystem.checkPsystem.DecoratorCheckPsystem

DecoratorCheckPsystem(CheckPsystem) - Constructor for class org.gcn.plinguacore.util.psystem.checkPsystem.DecoratorCheckPsystem

DecoratorCheckRule - Class in org.gcn.plinguacore.util.psystem.rule.checkRule

This class provides the basic functionality for all CheckRule instances which wrap another instance, as specified by Decorator pattern

DecoratorCheckRule() - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule

Creates a new DecoratorCheckRule instance, which checks only the restrictions defined on itself.

DecoratorCheckRule(CheckRule) - Constructor for class org.gcn.plinguacore.util.psystem.rule.checkRule.DecoratorCheckRule

Creates a new DecoratorCheckRule instance, which wraps cr as stated by Decorator pattern.

DecoratorSimulator - Class in org.gcn.plinguacore.simulator

This class gives support for all common functionality in simulator decorators, according to Decorator pattern

DecoratorSimulator(ISimulator) - Constructor for class org.gcn.plinguacore.simulator.DecoratorSimulator

Creates a new instance based on a decorated instance

DEF - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DEFAULT - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

dependsOn() - Method in class org.gcn.plinguacore.simulator.cellLike.stochastic.StochasticSimulator.Reaction

DETAILED_INFO - Static variable in class org.gcn.plinguacore.parser.input.VerbosityConstants

The verbosity level for simulators which are expected to report error, warning and basic and detailed info messages no messages

DeterministicWaitingTimesSimulator - Class in org.gcn.plinguacore.simulator.cellLike.stochastic

DeterministicWaitingTimesSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.stochastic.DeterministicWaitingTimesSimulator

DIFF - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DirectStochasticSimulator - Class in org.gcn.plinguacore.simulator.cellLike.stochastic

DirectStochasticSimulator(Psystem) - Constructor for class org.gcn.plinguacore.simulator.cellLike.stochastic.DirectStochasticSimulator

Constructor.

dissolve() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeMembrane

dissolve() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeNoSkinMembrane

dissolve() - Method in class org.gcn.plinguacore.util.psystem.membrane.ChangeableMembrane

Dissolves the membrane

dissolve() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeEnvironment

dissolve() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembrane

DISSOLVES - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

dissolves() - Method in class org.gcn.plinguacore.util.psystem.rule.AbstractRule

Gets if the rule dissolves the membrane which is applied to

dissolves() - Method in interface org.gcn.plinguacore.util.psystem.rule.IRule

DIV - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

divide() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeMembrane

divide() - Method in class org.gcn.plinguacore.util.psystem.cellLike.membrane.CellLikeNoSkinMembrane

divide() - Method in class org.gcn.plinguacore.util.psystem.membrane.ChangeableMembrane

Divides the membrane and returns the newly obtained membrane

divide() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeEnvironment

divide() - Method in class org.gcn.plinguacore.util.psystem.tissueLike.membrane.TissueLikeMembrane

DivisionPsystemFactory - Class in org.gcn.plinguacore.simulator.cellLike.activeMembranes

This class is intended to give support for P-systems in which only membrane division, evolution, dissolution and communication are allowed

DOLLAR - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DOT - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DOUBLE_ARROW - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DOUBLE_COLON - Static variable in interface org.gcn.plinguacore.parser.input.plingua.PlinguaJavaCcParserConstants

DoubleCommunicationTissueLikeRule - Class in org.gcn.plinguacore.util.psystem.rule.tissueLike