Simulating Population Dynamics P Systems with Proportional Object Distribution

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* [[Media:Bearded_vulture_BWMC12.pli|The bearded vulture model in P-Lingua format]]
* [[Media:Bearded_vulture_BWMC12.pli|The bearded vulture model in P-Lingua format]]
* [[Media:SimulationWorkflowDCBA.java|The source code of the simulation workflow]]
* [[Media:SimulationWorkflowDCBA.java|The source code of the simulation workflow]]
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* [[Media:SimulationWorkflow.jar‎|The simulation workflow jar file (with all dependencies included)]]
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* [[Media:SimulationWorkflow.jar‎|The simulation workflow jar file]] (with all dependencies included)
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** Instructions to reproduce the workflow:
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== Instructions==
# Put the files 'SimulationWorkflow.jar' and 'Bearded_vulture_BWMC12.pli' in a folder.
# Put the files 'SimulationWorkflow.jar' and 'Bearded_vulture_BWMC12.pli' in a folder.
# From the command-line, navigate to the folder and write: 'java -jar SimulationWorkflow.jar' (a Java Runtime Environment is needed)
# From the command-line, navigate to the folder and write: 'java -jar SimulationWorkflow.jar' (a Java Runtime Environment is needed)

Revision as of 21:19, 23 August 2012

Population Dynamics P systems (PDP systems, in short) refer to a formal framework for ecological modelling. The semantics of the model associates probabilities with rules, but the rules are also applied in a maximally parallel way.

This webpage includes all the material used in the paper DCBA: Simulating population dynamics P systems with proportional object distribution. The paper introduces the Direct distribution based on Consistent Blocks Algorithm (DCBA), a simulation algorithm which address the inherent non-determinism of the models by distributing proportionally the resources. A model for the Bearded Vulture has been used as example.

Materials

Instructions

  1. Put the files 'SimulationWorkflow.jar' and 'Bearded_vulture_BWMC12.pli' in a folder.
  2. From the command-line, navigate to the folder and write: 'java -jar SimulationWorkflow.jar' (a Java Runtime Environment is needed)
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